library(readxl)
library(lubridate)
Attaching package: 'lubridate'
The following objects are masked from 'package:base':
date, intersect, setdiff, union
library(skimr)
library(tidyverse)── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
✔ ggplot2 3.4.1 ✔ purrr 1.0.1
✔ tibble 3.2.0 ✔ dplyr 1.1.0
✔ tidyr 1.3.0 ✔ stringr 1.5.0
✔ readr 2.1.2 ✔ forcats 0.5.1
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ lubridate::as.difftime() masks base::as.difftime()
✖ lubridate::date() masks base::date()
✖ dplyr::filter() masks stats::filter()
✖ lubridate::intersect() masks base::intersect()
✖ dplyr::lag() masks stats::lag()
✖ lubridate::setdiff() masks base::setdiff()
✖ lubridate::union() masks base::union()
library(ggplot2)
library(psych)
Attaching package: 'psych'
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%+%, alpha
library(DescTools)
Attaching package: 'DescTools'
The following objects are masked from 'package:psych':
AUC, ICC, SD
library(lpSolve)
library(irr)
library(viridisLite)
library(viridis)
library(devtools)Loading required package: usethis
library(hrbrthemes)NOTE: Either Arial Narrow or Roboto Condensed fonts are required to use these themes.
Please use hrbrthemes::import_roboto_condensed() to install Roboto Condensed and
if Arial Narrow is not on your system, please see https://bit.ly/arialnarrow
library(ggalt)Registered S3 methods overwritten by 'ggalt':
method from
grid.draw.absoluteGrob ggplot2
grobHeight.absoluteGrob ggplot2
grobWidth.absoluteGrob ggplot2
grobX.absoluteGrob ggplot2
grobY.absoluteGrob ggplot2
library(heuristicsmineR)
library(scales)
Attaching package: 'scales'
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viridis_pal
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alpha, rescale
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discard
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col_factor
library(bupaR)
Attaching package: 'bupaR'
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filter
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timestamp
library(gghalves)
library(openxlsx)
library(distributional)
library(ggdist)
Attaching package: 'ggdist'
The following object is masked from 'package:DescTools':
Mode
library(cluster)
library(ComplexHeatmap)Loading required package: grid
========================================
ComplexHeatmap version 2.15.1
Bioconductor page: http://bioconductor.org/packages/ComplexHeatmap/
Github page: https://github.com/jokergoo/ComplexHeatmap
Documentation: http://jokergoo.github.io/ComplexHeatmap-reference
If you use it in published research, please cite either one:
- Gu, Z. Complex Heatmap Visualization. iMeta 2022.
- Gu, Z. Complex heatmaps reveal patterns and correlations in multidimensional
genomic data. Bioinformatics 2016.
The new InteractiveComplexHeatmap package can directly export static
complex heatmaps into an interactive Shiny app with zero effort. Have a try!
This message can be suppressed by:
suppressPackageStartupMessages(library(ComplexHeatmap))
========================================
library(circlize)========================================
circlize version 0.4.15
CRAN page: https://cran.r-project.org/package=circlize
Github page: https://github.com/jokergoo/circlize
Documentation: https://jokergoo.github.io/circlize_book/book/
If you use it in published research, please cite:
Gu, Z. circlize implements and enhances circular visualization
in R. Bioinformatics 2014.
This message can be suppressed by:
suppressPackageStartupMessages(library(circlize))
========================================
library(sjmisc)
Attaching package: 'sjmisc'
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%nin%
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is_empty
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replace_na
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add_case
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to_long
library(partitionComparison)
Attaching package: 'partitionComparison'
The following object is masked from 'package:DescTools':
N